GuideSkill: Evolving Executable LLM Agent Skills for Guideline-Grounded Clinical Reasoning
GuideSkill introduces an external reasoning layer that compiles clinical practice guidelines (CPGs) into executable functions to generate ordinal diagnostic-support scores. GuideSkill-Zero is initialized directly from CPGs, while GuideSkill-Evo refines and expands skills using case-diagnosis pairs to improve coverage and accuracy. At inference, the LLM proposes a differential diagnosis, grounds required features for each skill, and fuses skill rankings with executed scores for final decision-mak
Analysis
TL;DR
- GuideSkill introduces an external reasoning layer that compiles clinical practice guidelines (CPGs) into executable functions to generate ordinal diagnostic-support scores.
- GuideSkill-Zero is initialized directly from CPGs, while GuideSkill-Evo refines and expands skills using case-diagnosis pairs to improve coverage and accuracy.
- At inference, the LLM proposes a differential diagnosis, grounds required features for each skill, and fuses skill rankings with executed scores for final decision-making.
- Across four benchmarks and four backbones, GuideSkill-Zero improves macro-average accuracy by 13.45% over guideline RAG; GuideSkill-Evo achieves the highest performance across all backbones, increasing gold-label skill coverage from 56.5% to 99.5%.
- GuideSkill-Evo outperforms direct inference by 18.49% relatively and exceeds the strongest parameter-update baseline on Qwen3.5-9B by 11.16%, without updating the backbone model.
Why It Matters
This work addresses a critical gap in clinical AI: the inability of standard LLM systems to actively execute structured medical guidelines rather than merely retrieve or memorize them. By transforming static guidelines into dynamic, executable diagnostic functions, GuideSkill enables more reliable, interpretable, and clinically grounded reasoning—essential for high-stakes healthcare applications where safety and adherence to evidence-based protocols are paramount.
Technical Details
- Executable Skill Compilation: Disease-specific criteria from CPGs are compiled into functions that take patient features as input and return ordinal diagnostic-support scores, enabling rule-based reasoning within an LLM framework.
- Two-Phase Initialization: GuideSkill-Zero initializes skills directly from textual guidelines; GuideSkill-Evo iteratively refines existing skills and adds missing diagnoses using real-world case-diagnosis pairs.
- Inference Fusion Mechanism: During inference, the LLM generates a differential diagnosis list, matches it to available skills, grounds required features per skill, and combines the LLM’s ranking with executed skill scores via fusion logic.
- Model-Agnostic Design: The system operates independently of the underlying LLM backbone, tested across multiple models including Qwen3.5-9B, demonstrating broad compatibility without requiring fine-tuning.
- Evaluation Framework: Assessed across four clinical benchmarks using macro-average accuracy, skill coverage metrics, and expert evaluation of clinical soundness and acceptability.
Industry Insight
The success of GuideSkill suggests that integrating structured medical knowledge through executable rules—not just retrieval or training—can significantly enhance clinical decision support systems without compromising model flexibility. This approach offers a scalable path toward deploying trustworthy AI tools in healthcare that align with regulatory standards and clinician expectations, potentially reducing liability risks and accelerating adoption in hospital settings. Future efforts should focus on automating skill evolution pipelines and expanding coverage to rare conditions or evolving guidelines.
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